Interstitial lung disease due to ABCA3 deficiency
Pseudoxanthoma elasticum; Generalized arterial calcification of infancy type 2
Adrenomyeloneuropathy
Medium-chain acyl-CoA dehydrogenase deficiency
Very long-chain acyl-CoA dehydrogenase deficiency
Aspartylglucosaminuria
AIFM1 related disorders
Hereditary fructose intolerance
Infantile hypophosphatasia
Androgen insensitivity syndrome
The current testing method does not assess CAG trinucleotide repeats in exon 1 in this gene.
Argininosuccinic aciduria
Canavan disease
Wilson disease
Biotinidase Deficiency
NM_001370658.1:c.1270G>C (p.Asp424His) variant is not reported, due to low disease penetrance and its association to reduced enzyme activity in the homozygous state.
Limb-girdle muscular dystrophy type 2A
FG syndrome type 4; X-linked intellectual developmental disorder, Najm type
Classical homocystinuria
CEP290 related disorders
Deep intronic variant NM_025114.4:c.2991+1655A>G not included.
Cystic fibrosis
Only variants associated with classical Cystic Fibrosis are reported. Intron 8 polymorphic region in CFTR gene (5T allele) is only reported when the NM_000492.4:c.350G>A (p.Arg117His) variant is detected.
Choroideremia
Myotonia congenita
Achromatopsia type 2
Achromatopsia type 3
Alport syndrome type 3B
Alport syndrome type 1
Dystrophic epidermolysis bullosa COL7A1-Related
Carnitine palmitoyltransferase deficiency type 2
Leber congenital amaurosis type 8; Retinitis pigmentosa type 12
Coats plus syndrome
Congenital glaucoma type 3A; Anterior segment developmental anomaly
Classic congenital adrenal hyperplasia due to 21-hydroxylase deficiency
Whole gene analysis is not performed. Included variants: NM_000500.9:c.293-13C/A>G, NM_000500.9:c.332_339del, NM_000500.9:c.518T>A, NM_000500.9:c.710T>A, NM_000500.9:c.713T>A, NM_000500.9:c.719T>A, NM_000500.9:c.923dup, NM_000500.9:c.955C>T, NM_000500.9:c.1069C>T, 30kb deletion, Large gene conversion. NM_000500.9:c.955C>T variant is only reported when a CYP21A2 gene duplication is not detected. c.955C>T variant along witht the gene duplication has been rerported to be frequently found on the same chromosome (in cis), which results in the presence of two functional copies of the gene. In such cases, the individual is not considered a carrier for Congenital Adrenal Hyperplasia (Parajes et al., 2008; Kleinle et al., 2009).
Warsaw breakage syndrome
Smith-Lemli-Opitz syndrome
Pyruvate dehydrogenase E3 deficiency
Duchenne muscular dystrophy; Becker muscular dystrophy
Primary ciliary dyskinesia type 3
Dihydropyrimidine dehydrogenase deficiency
Short rib-polydactyly syndrome type 3
Hypohidrotic ectodermal dysplasia type 1
Familial dysautonomia
Ellis Van Creveld syndrome
Retinitis pigmentosa type 25
Hemophilia A
Detection of intron 22 inversion in the F8 gene is also included
Hemophilia B
Fragile X syndrome
5' UTR CGG trinucleotide repeats are analysed. Only alleles in the range of full mutation (>200 repeats) and premutation (55-200 repeats) are reported. Mosaicism, including gonadal mosaicism, may not be detected.
IPEX syndrome
Pompe disease
Krabbe disease
Galactosemia
Glycogen storage disease type 4; Adult polyglucosan body disease
Glutaricaciduria type 1
Ivemark syndrome
Congenital myasthenic syndrome type 12
Deafness autosomal recessive type 1A
Variants associated with a mild phenotype are not reported.
Erythrokeratodermia variabilis type 1
Variants associated with a mild phenotype are not reported.
Deafness autosomal recessive type 1B
Variants associated with a mild phenotype are not reported.
Fabry disease
Lethal congenital contracture syndrome type 1; Arthrogryposis-anterior horn cell disease syndrome
X-linked recessive ocular albinism; Congenital Nystagmus type 6
Alpha-thalassemia
Whole gene analysis is not performed. Included variants: --MED ; --SEA ; --THAI ; - α3.7 ; - α4.2 ; - α20.5 ; --FIL; Hb Constant Spring (NM_000517.4:c.427T>C)
Tay-Sachs disease
Hydrolethalus Syndrome
Mucopolysaccharidosis type 2
X-linked intellectual developmental disorder type 1
RETT related disorders
Bardet-Biedl syndrome; Joubert syndrome; Meckel syndrome
Methylmalonic acidemia with homocystinuria type cblC
Congenital amegakaryocytic thrombocytopenia type 1
X-linked centronuclear myopathy
Deafness autosomal recessive type 3
Nephrotic syndrome type 1
Oculocutaneous albinism type 2
Joubert syndrome type 10
Ornithine transcarbamylase deficiency
Phenylketonuria
Polycystic kidney disease type 4
Congenital disorder of glycosylation type 1A
POLG related disorders
Wiedemann-Rautenstrauch syndrome; Hypomyelinating leukodystrophy type 7
PRPS1 related disorders
Anauxetic dysplasia type 1; Metaphyseal dysplasia without hypotrichosis; Cartilage-hair hypoplasia
Aicardi-Goutières syndrome type 2
Retinoschisis
Shwachman-Diamond syndrome type 1
Myopia type 6
Systemic primary carnitine deficiency
Citrullinemia type 2
Pendred syndrome; Deafness autosomal recessive type 4
Oculocutaneous albinism type 4
Cerebral creatine deficiency syndrome type 1
Spinal Muscular Atrophy
Only deletion of the exon 7 in SMN1 gene is included. No sequencing or deletion/duplication analysis is conducted in other regions of this gene. This test does not detect “silent” carriers of SMA, who have two copies of the SMN1 gene on one chromosome and none on the other.
Niemann-Pick disease type A/B
X-linked epilepsy-learning disabilities-behavior disorders syndrome; X-linked intellectual developmental disorder type 50
Barth syndrome
TMEM67 related disorders
Mulibrey nanism syndrome
Combined oxidative phosphorylation deficiency type 3
Oculocutaneous albinism type 1A/1B
NM_000372.5:c.1205G>A, p.(Arg402Gln) hypomorphic variant is associated with milder clinical manifestations is not reported.
Crigler-Najjar syndrome type 1 and 2
Variants in the UGT1A1 gene associated with Gilbert syndrome are not reported.
Usher syndrome type 2A; Retinitis pigmentosa type 39
Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; X-linked thrombocytopenia
X-linked lymphoproliferative syndrome type 2
X-linked heterotaxia; VACTERL with hydrocephalus
Lissencephaly type 1; Subcortical band heterotopia
Beta-thalassemia; Sickle cell disease